Installation & dependencies

1. remotes (R package): remotes is needed to install R packages from Github repositories. It can be installed directly from CRAN within the R console as follows:

   install.packages("remotes")



2. filtar (R package): The filtar R package also exists to perform a series of data manipulations within the main FilTar workflow. It can be installed via use of the remotes R package with the following command within the R console:

   remotes::install_github('TBradley27/filtar_R')

   If you are using conda to manage your R installation, you may run into a few issues. See the following thread for possible resolutions




3. Install snakemake:

   Please install the latest version of snakemake using instructions from the official snakemake documentation documentation